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koko加速器vp-outline

The 2024 Xenopus Community White Paper is now available!

PIs: Please reference the White Paper in your NIH grant proposals and contact your program officers.

Download the 2024 Xenopus White Paper:

Word Document

PDF
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Dr. Anna Philpott of the University of Cambridge elected to membership of the European Molecular Biology Organization (EMBO) for 2024.
OpenMediaVault
koko加速器vp-outline

Archived genomes viewable on GBrowse.

As well as...

X. laevis v9.2

X. tropicalis v9.1 and v10.0

OpenMediaVault

Click "read more" on how to access archived genomes on Xenbase GBrowse:

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Gurdon et al., published in PNAS, show that long-term (hours to days as opposed to seconds) non-competitive binding of transcription factors such as neurogenic Ascl1 stabilizes gene expression.
OpenMediaVault
koko加速器vp-outline

Willsey & Xu et al., using OpenMediaVault, show that mutations in the neurodevelopmental disorder risk gene, dyrk1a, disrupts cell cycle progression and ciliogenesis causing brain defects. Published in Development.
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Abraham Fainsod and Sally Moody are seeking contributions for a book to be published by Taylor and Francis CRC Press.

Please communicate your interest to them by May 15, 2024 and prepare to submit your contributions by January 2021.
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Esmaeili et al. published in Developmental Biology their ATAC-seq study assessing chromatin accessibility during Xenopus gastrulation.

Processed ATAC-seq data viewable on JBrowse coming soon.
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The meeting has been postponed to August 15-19, 2021.

Portsmouth, UK at the EXRC
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Naert, Dimitrakopoulou et al. (2024) published in Oncogene their study describing the first frog model for the Li-Fraumeni Syndrome to study leukemia and malignant sarcoma.
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- available to BLAST

- view on JBrowse

99.86% of the genome mapped to chromosomes
~4500 new and refined models, 18% not present in trop v9.1

Click here to view the release document.
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2024 Xenopus White Paper

The 2024 Xenopus Community White Paper is now available!

PIs: Please reference the White Paper in your NIH grant proposals and contact your program officers.

Download the 2024 Xenopus White Paper:

Word Document

PDF
Read More...

BLAST Xenopus

BLAST datasets:

Sequences

Xenopus mRNA
Xenopus Protein

X. laevis genomes

J-Strain 9.2
Mitochondrial
Outbred Wildtype 1.0

X. tropicalis genomes

Nigerian 10.0
Nigerian 9.1

OpenMediaVault

BLAST Archives

OpenMediaVault

Xenbase JBrowse:

X. laevis genomes

J-Strain 9.2
Wildtype 1.0

X. tropicalis genomes

OpenMediaVault
Nigerian 9.1

UCSC genome browser:

X. tropicalis 9.1 on UCSC
Xenbase Track Hub
Veenstra Lab Track Hub

Other amphibian genomes

OpenMediaVault

Gene Expression

Gene expression patterns:

Gene Expression Search
Anatomy Search
OpenMediaVault
RNA-Seq Visualization
miRNA Catalog

OpenMediaVault

X. laevis Protein Expression

Genes

Gene catalogs and gene expression images:

Search Genes
Gene Search Tips
Gene Synteny @ Genomicus
Homologene

Nomenclature guidelines:

Chromosome Nomenclature
Gene Nomenclature
Gene Nomenclature Questions
Transgene Nomenclature

Anatomy & Development

Charts, movies, maps:

Anatomy Atlas
OpenMediaVault
Images of Xenopus Embryos
OpenMediaVault
Movies of Development
OpenMediaVault
XAO

Openmediavault 编译与安装过程 - 简书:2021-2-8 · Openmediavault 编译与安装过程 Openmediavault 编译与安装过程 Openmediavault，简称OMV，是开源NAS解决方案的不二之选，更是黑群晖之外的最佳选择。基于Debian的灵活性，众及低资源占用，使得它能够在各种架构的操作系统上大放异彩，这 ...